PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G161900.1
Common NameB456_012G161900, LOC105778845
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 303aa    MW: 34046.2 Da    PI: 7.1912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G161900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13123170355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gorai.012G161900.1 123 KDHIMAERKRREKLSEKFIALSALVPGL-----KKMDKATVLGDAIKYMKQLQ 170
                         6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.183120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10123170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-19124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-14125174No hitNo description
SuperFamilySSF474599.81E-18125187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEIPPIGELP EMGLLENPNI FNQWCIDELS VLPVPVPVSA SFGDNSQHYE ASSSRPATID  60
KPQKQLKITN CCKSGKTHIS TDIQSSFSPH TLPFSSSNYN PFGNQNFLVK GYHDTNNRIS  120
QSKDHIMAER KRREKLSEKF IALSALVPGL KKMDKATVLG DAIKYMKQLQ EKVKTLEEQA  180
RQKSIESVVF VKKYQLLGDI NAQFSSWDEI SSAPFDEPLP EIEARFCDQS VLISIHCEKR  240
KGFPEKIISA IEKFNLTVIN SNVMTFGSCA LHITIVAQMD MEFCMTIKEL VKNLHSAFIF  300
LV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6209208e-90JX620920.1 Gossypium hirsutum clone NBRI_GE67296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458057.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0D2V7750.0A0A0D2V775_G
STRINGPOPTR_0009s08500.13e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-57bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]